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Mapping of ProteinProtein Interaction Sites in the Plant

Mapping of ProteinProtein Interaction Sites in the Plant

Mapping of Protein-Protein Interaction Sites in the Plant ...

2011-7-8  The overlap between the flexible regions and the protein-protein interaction sites in Fd presented here is reminiscent of the way in which antibodies recognize antigens through mobile loops –. The structures of spherical animal viruses also showed that the segments that interact with antibodies were in loops , . Characterisitic seen in the ...

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Mapping of Protein-Protein Interaction Sites in the Plant ...

CiteSeerX - Document Details (Isaac Councill, Lee Giles, Pradeep Teregowda): Knowing the manner of protein-protein interactions is vital for understanding biological events. The plant-type [2Fe-2S] ferredoxin (Fd), a well-known small iron-sulfur protein with low redox potential, partitions electrons to a variety of Fddependent enzymes via specific protein-protein interactions.

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Mapping of protein-protein interaction sites in the plant ...

Abstract. Knowing the manner of protein-protein interactions is vital for understanding biological events. The plant-type [2Fe-2S] ferredoxin (Fd), a well-known small iron-sulfur protein with low redox potential, partitions electrons to a variety of Fd-dependent enzymes via specific protein-protein interactions.

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Mapping of Protein-Protein Interaction Sites in the Plant ...

Mapping of Protein-Protein Interaction Sites in the Plant-Type [2Fe-2S] Ferredoxin

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Mapping of protein-protein interaction sites in the plant ...

Mapping of protein-protein interaction sites in the plant-type [2Fe-2S] ferredoxin . By K. Fukuyama, H. Kameda, K. Hirabayashi and K. Wada. Get PDF (721 KB) Cite . BibTex; Full citation Publisher: 'International Union of Crystallography (IUCr)' Year: 2015.

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Visualizing protein–protein interactions in plants by ...

2021-1-25  Identifying protein–protein interactions (PPIs) is crucial for understanding biological processes. Many PPI tools are available, yet only some function within the context of a plant cell. Narrowing down even further, only a few tools allow complex multi-protein interactions to be visualized.

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Protein–protein interaction site mapping using NMR ...

2007-4-20  We demonstrate a novel NMR method for the mapping of protein–protein interaction sites. In our approach protein–protein binding sites are mapped by competition binding experiments using indirect NMR reporter technology and Ala positional scanning. The methodology provides high sensitivity, ease of implementation and high-throughput capabilities. The feasibility of the technique is ...

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PlaPPISite: a comprehensive resource for plant protein ...

Background: Protein-protein interactions (PPIs) play very important roles in diverse biological processes. Experimentally validated or predicted PPI data have become increasingly available in diverse plant species. To further explore the biological functions of PPIs, understanding the interaction details of plant PPIs (e.g., the 3D structural contexts of interaction sites) is necessary.

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Mapping of the protein-protein interaction network of

2019-2-22  Mapping of the protein-protein interaction network of LC8 dynein light chain by characterizing its binding motif using in vitro directed evolution and biophysical approaches Péter Rapali PhD thesis Supervised by László Nyitray and Gábor Pál PhD School of

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PlaPPISite: a comprehensive resource for plant protein ...

2020-2-6  Protein-protein interactions (PPIs) play very important roles in diverse biological processes. Experimentally validated or predicted PPI data have become increasingly available in diverse plant species. To further explore the biological functions of PPIs, understanding the interaction details of plant PPIs (e.g., the 3D structural contexts of interaction sites) is necessary.

get price

Mapping of protein-protein interaction sites by the ...

Dhayalan, Arunkumar, Jurkowski, Tomasz P, Laser, Heike, Reinhardt, Richard, Jia, Da, Cheng, Xiaodong and Jeltsch, Albert 2008. Mapping of protein-protein interaction ...

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Largest-ever map of plant protein interactions --

2011-7-30  Largest-ever map of plant protein interactions Date: July 30, 2011 Source: Salk Institute Summary: Researchers have mapped and analyzed thousands of protein-to-protein interactions

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Visualizing protein–protein interactions in plants by ...

Identifying protein–protein interactions (PPIs) is crucial for understanding biological processes. Many PPI tools are available, yet only some function within the context of a plant cell. Narrowing down even further, only a few tools allow complex multi-protein interactions to be visualized.

get price

Mapping Protein-Protein Interaction Using High

2017-4-25  Abstract. A tremendous asset to the analysis of protein-protein interactions is the yeast-2-hybrid (Y2H) method. The Y2H assay is a heterologous system that is expanding network biology knowledge via in vivo investigations of binary protein-protein interactions. Traditionally, the Y2H protocol entails the mating or co-transformation of yeast in ...

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plant.MAP - protein complexes

Protein complexes conserved in plants. This website provides access to protein complexes and stable protein interactions from A pan-plant protein complex map reveals deep conservation and alternate assemblies. Try "Search complexes" find if your protein is involved in a stable protein complexes.

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PlaPPISite: a comprehensive resource for plant protein ...

2020-2-6  Protein-protein interactions (PPIs) play very important roles in diverse biological processes. Experimentally validated or predicted PPI data have become increasingly available in diverse plant species. To further explore the biological functions of PPIs, understanding the interaction details of plant PPIs (e.g., the 3D structural contexts of interaction sites) is necessary.

get price

Altmetric – Mapping of Protein–Protein Interaction Sites ...

Mapping of Protein–Protein Interaction Sites by the ‘Absence of Interference’ Approach. Overview of attention for article published in Journal of Molecular Biology, February 2008. Altmetric Badge. About this Attention Score In the top 25% of all research outputs scored by Altmetric.

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The BAR and other Data Analysis Tools for Plant Biology

2021-7-28  Predicted protein-protein interactions from Dr. Matt Geisler and colleagues at Southern Illinois University. Interactome 2.0 [most recent version as of 10 February 2009] 70,944 predicted protein-protein interactions plus 62,626 experimentally determined PPIs and ~2.8 million protein-DNA interactions

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A point‐to‐point protein–protein interaction assay reveals ...

1 INTRODUCTION. Phytohormone and environmental cues coordinately regulate plant growth and development partially though protein–protein interactions (PPIs) among regulatory proteins in various signaling pathways (Chaiwanon, Wang, Zhu, Oh, Wang, 2016).PPIs in hormone and environmental signaling pathways must first be tested to elucidate the interactions among signaling pathways.

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Mapping of Homologous Interaction Sites in the Hepatitis

Hepatitis B virus consists of an outer envelope and an inner capsid, or core, that wraps around the small genome plus the viral replication enzyme. The icosahedrally symmetric nucleocapsid is assembled from multiple dimeric subunits of a single 183-residue capsid protein, which must therefore contain interfaces for monomer dimerization and for dimer multimerization. The atomic structure of the ...

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Mapping of protein-protein interaction sites by the ...

Dhayalan, Arunkumar, Jurkowski, Tomasz P, Laser, Heike, Reinhardt, Richard, Jia, Da, Cheng, Xiaodong and Jeltsch, Albert 2008. Mapping of protein-protein interaction ...

get price

Largest-ever map of plant protein interactions --

2011-7-30  Largest-ever map of plant protein interactions Date: July 30, 2011 Source: Salk Institute Summary: Researchers have mapped and analyzed thousands of protein-to-protein interactions

get price

Mapping Protein-Protein Interaction Using High

2017-4-25  Abstract. A tremendous asset to the analysis of protein-protein interactions is the yeast-2-hybrid (Y2H) method. The Y2H assay is a heterologous system that is expanding network biology knowledge via in vivo investigations of binary protein-protein interactions. Traditionally, the Y2H protocol entails the mating or co-transformation of yeast in ...

get price

plant.MAP - protein complexes

Protein complexes conserved in plants. This website provides access to protein complexes and stable protein interactions from A pan-plant protein complex map reveals deep conservation and alternate assemblies. Try "Search complexes" find if your protein is involved in a stable protein complexes.

get price

Mapping of the protein-protein interaction network of

2019-2-22  Mapping of the protein-protein interaction network of LC8 dynein light chain by characterizing its binding motif using in vitro directed evolution and biophysical approaches Péter Rapali PhD thesis Supervised by László Nyitray and Gábor Pál PhD School of

get price

The BAR and other Data Analysis Tools for Plant Biology

2021-7-28  Predicted protein-protein interactions from Dr. Matt Geisler and colleagues at Southern Illinois University. Interactome 2.0 [most recent version as of 10 February 2009] 70,944 predicted protein-protein interactions plus 62,626 experimentally determined PPIs and ~2.8 million protein-DNA interactions

get price

Capturing the phosphorylation and protein interaction ...

2019-3-4  Park, S., Rancour, D. M. Bednarek, S. Y. Protein domain–domain interactions and requirements for the negative regulation of Arabidopsis CDC48/p97 by the plant

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Two‐hybrid protein–protein interaction analysis in ...

2006-4-21  Introduction. Protein–protein interaction has been considered as increasingly important for the molecular understanding of biological processes (Pawson and Nash, 2003).Several methods have been proposed for studying protein–protein interaction in vitro and in vivo.In particular, yeast two-hybrid approaches have been very successful in identifying putative protein interaction partners ...

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Sequence-based prediction of protein-protein

2021-1-25  protein-protein association that can be more widely available, such as co-expression and co-localization, have also been shown to correlate with physical protein-protein interaction. In cases where there is a reasonably-sized training set and/or a rich set of input data modalities, these methods perform very well and can be powerful tools [3,25 ...

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STRING: functional protein association networks

© STRING Consortium 2021. SIB - Swiss Institute of Bioinformatics; CPR - Novo Nordisk Foundation Center Protein Research; EMBL - European Molecular Biology Laboratory

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